Urbanization and Anthropogenic Impacts on Fungal Diversity
Implications for Ecosystem Health and Sustainability
Keywords:
Fungi, Bioindicators, Mycoindicators, Ecosystem Health, SDGs, MycorrhizaeAbstract
Macroscopic fungal species forming fruiting bodies are vital for the proper functioning of ecosystems due to their roles in decomposition and nutrient cycling, soil formation, and plant fungal symbiosis. Urbanization and human intervention lead to significant alterations in fungal communities in soil, water, atmosphere, and artificial ecosystems through changes in diversity, ecological functional groups, and ecosystem stability. This review presents a critical synthesis of the available information on the influence of urbanization processes and anthropogenic impacts on mushroom diversity and examines the importance of fungi as ecological bioindicators. The review was carried out via a comprehensive literature analysis focusing on urban mycology, fungal ecology, environmental monitoring, and biodiversity conservation. Key topics covered in this paper include habitat fragmentation, pollution-induced stress, climate change-related impacts, changes in fungal community structure, and the ecological value of mycoindicators of environmental conditions. In addition, special attention is paid to the relevance of fungal conservation in light of global environmental challenges such as the implementation of the UN Sustainable Development Goals. The study recommends establishing a comprehensive system of monitoring the mycobiome in urban areas, developing strong conservation policies for fungi, and raising public awareness regarding the importance of fungi for urban sustainability.
References
Abarenkov, K., Nilsson, R. H., Larsson, K. H., Alexander, I. J., Eberhardt, U., Erland, S., & Kõljalg, U. (2010). The UNITE database for molecular identification of fungi–recent updates and future perspectives. The New Phytologist, 186(2), 281-285. DOI: 10.1111/j.1469-8137.2009.03160.x
Ahmed, S., Chowdhury, A. N., Dey, A. K., Moniruzzaman, M., & Kowser, A. (2022). Isolation and identification of rhizosphere soil fungi from papaya (Carica papaya L.) and eggplant (Solanum melongena L.) at BCSIR campus in Rajshahi, Bangladesh. International Journal of Scientific and Research Publication, 12(4), 21-26. DOI: 10.3389/fpls.2022.849521
Ahmad, R., Khan, M. I., & Ali, S. (2023). Soil microbial diversity and sustainable agricultural ecosystems. International Journal of Agriculture Innovations and Cutting Edge Research, 2(1), 45–58. DOI: 10.3390/d16120734.
Abdullahi, R., Kwari, J. S., & Zubairu, A. M. (2021). Arbuscular mycorrhizal fungi association with some selected medicinal plants. Asian Journal of Soil Science and Plant Nutrition, 7(4), 57-62. DOI: 10.9734/ajsspn/2021/v8i130122
Averill, C., Werbin, Z. R., Atherton, K. F., Bhatnagar, J. M., & Dietze, M. C. (2021). Soil microbiome predictability increases with spatial and taxonomic scale. Nature Ecology & Evolution, 5(6), 747-756. https://doi.org/10.1038/s41559-021-01445-9
Authier, L., Violle, C., & Richard, F. (2022). Ectomycorrhizal networks in the Anthropocene: from natural ecosystems to urban planning. Frontiers in Plant Science, 13, 900231. DOI: 10.3389/fpls.2022.900231.
Baldrian, P. (2017). Microbial activity and the dynamics of ecosystem processes in forest soils. Current opinion in microbiology, 37, 128-134. DOI: 10.1016/j.mib.2017.05.008
Baldrian, P., Bell-Dereske, L., Lepinay, C., Větrovský, T., & Kohout, P. (2022). Fungal communities in soils under global change. Studies in Mycology, 103(1), 1-24. https://doi.org/10.3114/sim.2022.103.01.
Brady, C. (2024). Mushroom Composition Across an Elevational Gradient During the 2024 Wet Season in Mazumbai Forest Reserve, Tanzania. DOI: 10.1111/nph. 17031.
Barnes, C. S., & Hershey, G. K. K. (2025). Indoor and outdoor fungal allergens and impacts on respiratory allergic disease. The Journal of Allergy and Clinical Immunology: In Practice, 13(6), 1267-1271. DOI: 10.1016/j.jaip.2025.03.015
Brandon, P. S., & Lombardi, P. (2010). Evaluating sustainable development in the built environment. John Wiley & Sons.
Bahram, M., Hildebrand, F., Forslund, S. K., Anderson, J. L., Soudzilovskaia, N. A., Bodegom, P. M., & Bork, P. (2018). Structure and function of the global topsoil microbiome. Nature, 560(7717), 233-237https://doi.org/10.1038/s41586-018-0386-6
Costa, J. R., Brancalion, P. H., Joly, F. X., Simões, L. H., Bonfanti, J., Le Maire, G., & Guillemot, J. (2026). Forest ecosystem multifunctionality: A systematic review of measures and drivers. Current Forestry Reports, 12(1), 2. https://doi.org/10.1007/s40725-025-00266-4.
Calderon, M. R., Almeida, C. A., González, P., & Jofré, M. B. (2019). Influence of water quality and habitat conditions on amphibian community metrics in rivers affected by urban activity. Urban Ecosystems, 22(4), 743-755. DOI: 10.1007/s11252-018-0827-6
Chen, W., Modi, D., & Picot, A. (2023). Soil and phytomicrobiome for plant disease suppression and management under climate change: A review. Plants, 12(14), 2736. DOI: 10.3390/plants12142736.
Devuyst, D. (2001). Introduction to Sustainability Assessment. How green is the City?: Sustainability assessment and the Management of Urban Environments, 1.
Djemiel, C., Dequiedt, S., Karimi, B., Cottin, A., Horrigue, W., Bailly, A., & Terrat, S. (2022). Potential of meta-omics to provide modern microbial indicators for monitoring soil quality and securing food production. Frontiers in Microbiology, 13, 889788. DOI: 10.3389/fmicb.2022.889788
De Medeiros, P. M., Barbosa, D. M., dos Santos, G. M. C., & da Silva, R. R. V. (2021). Wild food plant popularization and biocultural conservation: challenges and perspectives. Local Food Plants of Brazil, 341-349.
Edwards, J. D., Kazenel, M. R., Luo, Y., Lynn, J. S., McCulley, R. L., Souza, L., & Kivlin, S. N. (2025). Warming disrupts plant-fungal endophyte symbiosis more strongly in leaves than in roots. bioRxiv, 2025-01. https://doi.org/10.1101/2025.01.xxxxx.
Egidi, E., Delgado-Baquerizo, M., Plett, J., et al. (2023). A few Ascomycota taxa dominate soil fungal communities worldwide. Nature Communications, 10(1), 2369. https://doi.org/10.1038/s41467-019-10373-z
El Abed, N., Salem, I., Khedher, M., M’hamdi, M., & Boughalleb-M’hamdi, N. (2017). Isolation and identification of fungal communities in organic and conventional soils. Int. J. Curr. Microbiol. App. Sci, 6(4), 1111-1123.
Ferrari, B., Quatrini, V., Barbati, A., Corona, P., Masini, E., & Russo, D. (2019). Conservation and enhancement of the green infrastructure as a nature-based solution for Rome’s sustainable development. Urban Ecosystems, 22(5), 865-878. DOI: 10.1007/s11252-019-00858-6
García, D. A. (2017). Green areas management and bioengineering techniques for improving urban ecological sustainability. Sustainable Cities and Society, 30, 108-117. DOI: 10.1016/j.scs.2017.01.003
Gehring, C., Sevanto, S., Patterson, A., Ulrich, D. E., & Kuske, C. R. (2020). Ectomycorrhizal and dark septate fungal associations of pinyon pine are differentially affected by experimental drought and warming. Frontiers in Plant Science, 11, 582574.
Hernández-Moreno, S. (2009). Current technologies applied to urban sustainable development. Theoretical and Empirical Research in Urban Management, 4(4 (13), 125-140.
Hwang, S. O., Han, B. H., Kim, H. G., & Kim, B. H. (2025). Next-generation river health monitoring: integrating AI, GIS, and eDNA for real-time and biodiversity-driven assessment. Hydrobiology, 4(3), 19. https://doi.org/10.3390/hydrobiology4030019.
Iqbal, M., & Hanif, M. (2024). Ecological impacts of urbanization on soil microbial communities. International Journal of Agriculture Innovations and Cutting Edge Research, 3(2), 65–81.
Jansson, J. K., & Hofmockel, K. S. (2020). Soil microbiomes and climate change. Nature Reviews Microbiology, 18(1), 35-46. DOI: 10.1038/s41579-019-0265-7
Jiang, J., Ren, H., Wang, X., & Liu, B. (2024). Pollution characteristics and potential health effects of airborne microplastics and culturable microorganisms during urban haze in Harbin, China. Bioresource Technology, 393, 130132. DOI: 10.1016/j.biortech.2023.130132
Kanakidou, M., Sfakianaki, M., & Probst, A. (2022). Impact of air pollution on terrestrial ecosystems. In Atmospheric chemistry in the Mediterranean region: volume 2-from air pollutant sources to impacts. Cham: Springer International Publishing. 511-542. 10.1007/978-3-030-94100-1_20.
Kiran, M., Caboň, M., Senko, D., Khalid, A. N., & Adamčík, S. (2021). Description of the fifth new species of Russula subsect. Maculatinae from Pakistan indicates a local diversity hotspot of ectomycorrhizal fungi in the Southwestern Himalayas. Life, 11(7), 662. DOI: 10.3390/life11070662
Kumar, P., Kamle, M., & Mahato, D. K. (Eds.). (2023). Mycotoxins in food and feed: detection and management strategies. CRC Press.
Leis, J. (2022). Fungal Associations in an Urban Forest.
Loc, N. Q., Bui, T. K. L., Tu, N. M., Nguyen, T. T. T., Hoang, N. D., Nguyen, T. B., & Ghosh, S. K. (2024). Enhancing circular economy in the mushroom production chain: systematic literature review and field study in the Central Highlands of Vietnam. The Journal of Solid Waste Technology and Management, 50(4), 689-710. DOI: 10.5276/JSWTM.2024.689
Li, Y., Li, R., Li, Q., Zhao, X., Zhao, P., Yan, P., & Xue, J. (2025). Study on the synergistic mechanisms of fungal biodiversity and ecosystem multifunctionality across vegetation diversity gradients. Science of the Total Environment, 964, 178563. DOI: 10.1016/j.scitotenv.2025.178563.
Li, N., & Dong, K. (2025). Fungal Communities in Various Environments. Journal of Fungi, 11(8), 560. DOI: 10.3390/jof11080560.
Luo, S., Lin, Y., Chen, R., Han, J., & Liu, Y. (2025). Road Density Shapes Soil Fungal Community Composition in Urban Road Green Space. Diversity, 17(8), 539. DOI: 10.3390/d17080539
Maula, F., Saba, M., Asif, M., Durrani, A., Akram, W., Ullah, F., & Ullah, M. Species Diversity And Ecological Analysis Of Macro-Fungi Of District Swabi, Khyber Pakhtunkhwa, Pakistan.
Mersal, A. (2016). Sustainable urban futures: Environmental planning for sustainable urban development. Procedia Environmental Sciences, 34, 49-61. DOI: 10.1016/j.proenv.2016.04.007
Mitchell, G. (2022). The effects of urban forest restoration and environmental heterogeneity on microbial diversity and ecosystem functioning (Doctoral dissertation, The University of Waikato).
Netherway, T., & Bahram, M. (2021). Fungal biogeography. Biogeography: an integrative approach to the evolution of living, 193-218.
Ogola, H. J. O., & Odhiambo, K. A. (2025). From Waste to Water Quality: How Human Activities Are Shaping Lake Victoria’s Microbiome and Ecosystem Health. In Urban Watershed Microbiology, Environmental Indicators, Regional Case Studies, and Bioremediation Strategies. Cham: Springer Nature Switzerland. 2, 953-1000.
Oglu Huseynov, E. F. (2011). Planning of sustainable cities in view of green architecture. Procedia Engineering, 21, 534-542. DOI: 10.1016/j.proeng.2011.11.2023.
Olchowik, J., Jankowski, P., Suchocka, M., Malewski, T., Wiesiołek, A., & Hilszczańska, D. (2023). The impact of anthropogenic transformation of urban soils on ectomycorrhizal fungal communities associated with silver birch (Betula pendula Roth.) growth in natural versus urban soils. Scientific Reports, 13(1), 21268. DOI: 10.1038/s41598-023-48428-1
Ooi, Q. E., Nguyen, C. T. T., Laloo, A., Bandla, A., & Swarup, S. (2022). Urban soil microbiome functions and their linkages with ecosystem services. In Soils in Urban Ecosystem Singapore: Springer Singapore. 47-63. DOI: 10.1007/978-981-16-5037-3_3.
Opoku, A. (2019). Biodiversity and the built environment: Implications for the Sustainable Development Goals (SDGs). Resources, conservation and recycling, 141, 1-7. DOI: 10.1016/j.resconrec.2018.10.011.
Pollock, L. J., Kitzes, J., Beery, S., Gaynor, K. M., Jarzyna, M. A., Mac Aodha, O., & Berger-Wolf, T. (2025). Harnessing artificial intelligence to fill global shortfalls in biodiversity knowledge. Nature Reviews Biodiversity, 1(3), 166-182. DOI: 10.1038/s44358-025-00016-3
Peay, K. G., Kennedy, P. G., & Talbot, J. M. (2022). Dimensions of biodiversity in the Earth's mycobiome. Nature Reviews Microbiology, 20(2), 95–108. https://doi.org/10.1038/s41579-021-00631-2
Ramos Irizarry, P., Smith, D. F., & Gusa, A. (2025). Climate Change Impacts on Environmental Fungi: Human Health and Fungal Disease.
Razaq, A., Shahzad, S., Ali, H., & Noor, A. (2014). New reported species of macrofungi from Pakistan. Journal of Agri-food and Applied Sciences, 2(3), 67-71.
Ryan, M. J., McCluskey, K., Verkleij, G., Robert, V., & Smith, D. (2019). Fungal biological resources to support international development: challenges and opportunities. World Journal of Microbiology and Biotechnology, 35(9), 139. DOI: 10.1007/s11274-019-2728-3.
Sangwan, S., Kumar, M., Lamba, R., Singh, S., Kumari, A., & Wati, L. (2024). Bioindicators: Natural Biotic Sensors of Environmental Pollution and Ecological Disturbance. In the Environmental Nexus Approach. CRC Press. 311-337.
Seena, S., Baschien, C., Barros, J., Sridhar, K. R., Graça, M. A., Mykrä, H., & Bundschuh, M. (2023). Ecosystem services provided by fungi in freshwaters: a wake-up call. Hydrobiologia, 850(12), 2779-2794. DOI: 10.1007/s10750-023-05141-6.
Shi, X., Zhou, S., Xu, L., Nethmini, R. T., Zhang, Y., Huang, L., & Pan, L. (2025). Shifts in Soil Fungal Community and Trophic Modes During Mangrove Ecosystem Restoration. Journal of Fungi, 11(2), 146. DOI: 10.3390/jof11020146.
Silva, A. O., Previl, R., Barbosa, M. V., Barbosa, M. H., Vilela, L. A. F., dos Santos, J. V., & Carneiro, M. A. C. (2025). Bioremediation Strategy for Arsenic-Contaminated Soils using Formononetin Associated with Rhizophagus clarus Inoculation. Water, Air, & Soil Pollution, 236(13), 857. DOI: 10.1007/s11270-025-07291-8.
Singh, V. P., Kumar, A., Srivastava, A., & Kumar, A. (2024). Advancing environmental sustainability: a comprehensive review on alleviating carbon footprint and its application in microalgal fermentation and bioremediation. Environment, Development and Sustainability, 1-46. DOI: 10.1007/s10668-024-04567-3
Sultana, K., Shinwari, Z. K., & Iftikhar, F. (2007). Diversity of edible mushrooms in Pakistan. Pakistan Journal of Agricultural Research, 20.
Sun, X., Liddicoat, C., Tiunov, A., Wang, B., Zhang, Y., Lu, C., & Zhu, Y. G. (2023). Harnessing soil biodiversity to promote human health in cities. npj Urban sustainability, 3(1), 5. DOI: 10.1038/s42949-023-00080-4.
Tedersoo, L., & Nilsson, R. H. (2017). Molecular identification of fungi. Molecular mycorrhizal symbiosis, 301-322.
Tedersoo, L., Bahram, M., Põlme, S., Kõljalg, U., Yorou, N. S., Wijesundera, R., & Abarenkov, K. (2014). Global diversity and geography of soil fungi. Science, 346(6213), 1256688. DOI: 10.1126/science. 1256688.
Tobias, J. A., Bullock, J. M., Dicks, L. V., Forester, B. R., & Razgour, O. (2025). Biodiversity conservation requires integration of species-centric and process-based strategies. Proceedings of the National Academy of Sciences, 122(31), e2410936122. DOI: 10.1073/pnas. 2410936122
Ullah, T. S., Firdous, S. S., Shier, W. T., Hussain, J., Shaheen, H., Usman, M., & Khalid, A. N. (2022). Diversity and ethnomycological importance of mushrooms from Western Himalayas, Kashmir. Journal of Ethnobiology and Ethnomedicine, 18(1), 32. DOI: 10.1186/s13002-022-00531-0.
Větrovský, T., Kohout, P., Kopecký, M., Machac, A., Man, M., Bahnmann, B. D., & Baldrian, P. (2019). A meta-analysis of global fungal distribution reveals climate-driven patterns. Nature communications, 10(1), 5142. DOI: 10.1038/s41467-019-13012-4
Wani, A. H., Pala, S. A., Boda, R. H., & Bhat, M. Y. (2020). Fungal diversity in the Kashmir Himalaya. In Biodiversity of the Himalaya: Jammu and Kashmir State. Singapore: Springer Singapore. 319-341. DOI: 10.1007/978-981-15-3980-3_15.
Yan, K., Chen, Y., Zhao, M., Li, Y., & He, J. (2025). Urbanization Changes the Composition of Airborne Fungi and Increases the Proportion of Fungal Allergens: A Case Study in Shanghai, China. Atmosphere, 16(6), 641. DOI: 10.3390/atmos16060641.
Yaseen, T., Mabood, F., Gul, R., ur Rehman, K., & Akhtar, N. (2020). Investigating arbuscular mycorrhizal fungal infection in medicinal plant roots in different localities of the Tehsil Shabqadar, District Charsadda, and Khyber Pakhtunkhwa Province, Pakistan. Pure and Applied Biology, 9(1), 427-435. DOI: 10.19045/bspab. 2020.90046.
Zari, M. P. (2014). Ecosystem services analysis in response to biodiversity loss caused by the built environment. SAPI EN. S. Surveys and Perspectives Integrating Environment and Society, (7.1). DOI: 10.4000/sapiens. 1459.
Zeb, M., Ullah, A., Ullah, F., Haq, A., Ullah, I., Badshah, L., & Haq, M. A. (2023). Diversity and biological characteristics of macrofungi of district Bajaur, a remote area of Pakistan in the Hindu Kush range. Heliyon, 9(7). DOI: 10.1016/j.heliyon.2023.e18045.
Zheng, B., Hui, N., Jumpponen, A., Lu, C., Pouyat, R., Szlavecz, K., & Kotze, D. J. (2025). Urbanization leads to asynchronous homogenization of soil microbial communities across biomes. Environmental Science and Ecotechnology, 25, 100547. DOI: 10.1016/j.ese.2025.100547.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 International Journal of Agriculture Innovations and Cutting-Edge Research (HEC Recognised)

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
BWO Research International
Pakistan